CGAP quality controls
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VCF Quality Control
BAM Quality Control
CGAP quality controls
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Overview
¶
This is a documentation for quality controls that are part of CGAP pipelines.
Contents
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Docker Image
VCF Quality Control
Overview
Definitions
variant types distribution
base substitutions
transition-transversion ratio
heterozygosity ratio
depth of coverage
mendelian errors in trio
BAM Quality Control
Overview
Definitions
Mapping stats
Coverage
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